Graph Based Algorithm
Description:
GBA is a novel algorithm for identifying low complexity regions in a protein sequence.
[1]
Download the source code of GBA
Print proteins in fasta format
OR
Upload proteins in fasta format
Mode of input
Text Area
File Upload
Forget rate for R and NR matrices (α)
0.95
0.90
0.85
Window Size (t1)
Max number of indels in tandem repeats (t2)
Max number of indels in cryptic repeats (t3)
Email Address:
[1] Xuehui Li and Tamer Kahveci (2006) A Novel algorithm for identifying low-complexity regions in a protein sequence.
Bioinformatics,
22(24):2980-2987,2006.