Graph Based Algorithm


Description:

GBA is a novel algorithm for identifying low complexity regions in a protein sequence.[1]
Download the source code of GBA


Mode of input

Text Area
File Upload
Print proteins in fasta format OR Upload proteins in fasta format
Forget rate for R and NR matrices (α)

Window Size (t1) Max number of indels in tandem repeats (t2) Max number of indels in cryptic repeats (t3)

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[1] Xuehui Li and Tamer Kahveci (2006) A Novel algorithm for identifying low-complexity regions in a protein sequence. Bioinformatics, 22(24):2980-2987,2006.