The Bioinformatics Lab

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The Bioinformatics Lab develops novel algorithms and software for computational analysis of bioinformatics data.

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Recent News and Events

Tamer Kahveci's is the PC co-chair of the Workshop on Epigenomics and Cell Function (ECF) 2013 with David Gilbert.

Zane has received the UF-HHMI Science for Life intramural research award. We wish him success at his research career. (04/2013)

Andrei defended his thesis proposal. The title of his thesis is "Probabilistic Biological Networks". (04/2013)

Gunhan defended his thesis. The title of his thesis is "Querying Large Biological Network Datasets". (04/2013)

Nirmalya's paper with Tamer Kahveci, Sanjay Ranka and Jesse Gregory lab is accepted to the PLoS ONE Journal. The title of their paper is "Metabolomic Analysis Reveals Extended Metabolic Consequences of Marginal Vitamin B-6 Deficiency in Healthy Human Subjects". (04/2013)

Saad Sheik's paper with Tamer Kahveci, Sanjay Ranka and Gordon Burleigh is accepted to the Bioinformatics Journal. The title of their paper is "Stability Analysis of Phylogenetic Trees". (11/2012)

Andrei Todor's paper with Alin Dobra and Tamer Kahveci is accepted to the IEEE/ACM Transactions on Computational Biology and Bioinformatics Journal. The title of their paper is "Probabilistic Biological Network Alignment". (10/2012)

Gunhan Gulsoy's paper with Nirmalya Bandhyopadhyay and Tamer Kahveci is accepted to the Journal "BMC:Bioinformatics". The title of their paper is "HIDEN: Hierarchical decomposition of regulatory networks". (09/2012)

Tamer Kahveci's paper with Seyedsasan Hashemikhabir, Eyup Serdar Ayaz, Yusuf Kavurucu and Tolga Can is accepted to the IEEE/ACM Transactions on Computational Biology and Bioinformatics Journal. The title of their paper is "Large scale signaling network reconstruction". (09/2012)

Haitham Gabr's paper with Alin Dobra and Tamer Kahveci is accepted to the Pacific Symposium on Biocomputing (PSB). The title of their paper is "From uncertain protein interaction networks to signaling pathways through intensive color coding". (09/2012)

Mahmudul Hasan's paper with Yusuf Kavurucu and Tamer Kahveci is accepted to the IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM). The title of their paper is "SiS: Significant Subnetworks in Massive Number of Network Topologies". (07/2012)

Andrei Todor's paper with Alin Dobra and Tamer Kahveci is accepted to the IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM). The title of their paper is "Uncertain interactions affect degree distribution of biological networks". (07/2012)

Tamer Kahveci's paper with Avinash Ramu and Gordon Burleigh is accepted to the BMC Bioinformatics Journal. The title of their paper is "A scalable method for identifying frequent subtrees in sets of large phylogenetic trees". (07/2012)